PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02139.60
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NF-YC
Protein Properties Length: 218aa    MW: 25363.7 Da    PI: 6.2611
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02139.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC140.35e-44611632100
          NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                    l  fw++q   i++++  k +h+lPlarik+i+k+d +vkmisa++P+l+skacelfileltlr+wl++ee+krrtl+++dia a+ + d  dflv
  Jcr4S02139.60  61 LDFFWNQQlleIQTTSACKtHHQLPLARIKRIMKSDGEVKMISADTPILFSKACELFILELTLRAWLQTEECKRRTLQRCDIARAIRHDDALDFLV 156
                    678*****97777888888799************************************************************************** PP

          NF-YC  94 divprde 100
                    d+vp+d+
  Jcr4S02139.60 157 DVVPHDH 163
                    ****985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.63E-2879172IPR009072Histone-fold
PfamPF008089.5E-1883146IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.107.2E-3384160IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDLNQSTEFN PSSNTNSPPP IHHFMPISNN FMFPNYHYQP TKQDCQEARH SRFMQMQKQN  60
LDFFWNQQLL EIQTTSACKT HHQLPLARIK RIMKSDGEVK MISADTPILF SKACELFILE  120
LTLRAWLQTE ECKRRTLQRC DIARAIRHDD ALDFLVDVVP HDHDHDHGHP NKVELHVGVY  180
RSVDGHWVTG YDADVGSCDA VEAELWGLYD GFKIGMEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C9e-336116019118HapE
4g92_C9e-336116019118HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012078033.11e-128PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ8LCG71e-39NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A067K9V01e-102A0A067K9V0_JATCU; Uncharacterized protein
STRINGPOPTR_0005s15090.11e-52(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143991518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-36nuclear factor Y, subunit C2